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Evaluating Pretrained Protein Language Model Embeddings as Proxies for Functional SimilarityNARA Subscribed
Protein Language Models (PLMs) have emerged as powerful tools for representing protein sequences. We explore how embeddings (numeric vector representations) from pretrained PLMs can serve as direct numeric proxies for protein structure and function without requiring additional training or fine-tuning. In a proof-of-concept study of 22 cross-species complementation triplets—a gold standard for functional similarity where genes...
Effect of temperature on metabolic stress and recovery of two Argyrosomus species from simulated catch‐and‐release anglingNARA Subscribed
Catch‐and‐release (C&R) angling has grown in popularity due to increasing numbers of conservation‐minded anglers and regulations of recreational fisheries. C&R is often assumed to cause low mortality but can cause physiological and physical impairment. Fish metabolism and temperature interact to play a critical role in the biological functioning of fish. Understanding the relationship between temperature, fish metabolism, and...
Aim The urgency for remote, reliable and scalable biodiversity monitoring amidst mounting human pressures on ecosystems has sparked worldwide interest in Passive Acoustic Monitoring (PAM), which can track life underwater and on land. However, we lack a unified methodology to report this sampling effort and a comprehensive overview of PAM coverage to gauge its potential as a global research and monitoring tool. To address this...
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