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Standardized microhaplotype databases and frameworks for assessing and mining crop genetic diversityNARA Subscribed
Keymessage Standardized microhaplotype databases for eight diverse crops enable multiallelic analyses, comparative genetics, and breeding decisions. Abstract Microhaplotypes are short genomic segments that contain multiple tightly linked variants, providing multi-allelic data that can enhance genetic resolution compared to traditional biallelic single nucleotide polymorphism (SNP) markers. Here, we present the creation and uti...
Aim We investigate the distribution of dispersal modes — endozoochory (via animal ingestion), synzoochory (via animal seed accumulation) and anemochory (via wind)—and seed mass of woody plants across Brazilian ecosystems, testing whether their relative abundance in local plant communities could be predicted by climate, edaphic factors and dispersal agents (e.g., the main vectors moving seeds). We expected climate to be the mai...
The Toxicology Investigators Consortium 2024 Annual ReportNARA Subscribed
Pollinators receive considerable interest due to their fundamental role in ecosystem functioning and human well‐being. Unlike farmlands, studies of urban pollinator‐promoting interventions are scarce and have not been synthesised, hampering policy implementation. To fill this gap, we compared pollinator‐promoting interventions (treatment) with conventionally managed (control) sites regarding vegetation, floral resources, and p...
Fine mapping and identification of causal alleles at the Ur-11 locus controlling rust resistance in common bean (Phaseolus vulgaris L.)NARA Subscribed
The Middle American rust resistance gene Ur-11 present in common bean ( Phaseolus vulgaris L.) confers resistance to all but one known race of the pathogen Uromyces appendiculatus (Pers.) Unger. Even though progress has been made in understanding the host–pathogen interactions between common bean and U. appendiculatus , the causal alleles of the majority of rust resistance loci, including Ur-11, remain unknown. A genome-wide a...
Capture-mark-recapture methods (CMR) are a commonly used tool in species conservation and management for the estimation of demographic parameters in a population. However, biases in these estimates can occur due to the heterogeneity in processes influencing recapture data or the experimental design. We outline an approach to quantify and identify ways to reduce this bias through both experimental design and data analysis, usin...
The Toxicology Investigators Consortium 2023 Annual ReportNARA Subscribed
Dominance and rarity in tree communities across the globe: Patterns, predictors and threatsNARA Subscribed
Aim Ecological and anthropogenic factors shift the abundances of dominant and rare tree species within local forest communities, thus affecting species composition and ecosystem functioning. To inform forest and conservation management it is important to understand the drivers of dominance and rarity in local tree communities. We answer the following research questions: (1) What are the patterns of dominance and rarity in tree...
Geography and ecology shape the phylogenetic composition of Amazonian tree communitiesNARA Subscribed
Aim Amazonia hosts more tree species from numerous evolutionary lineages, both young and ancient, than any other biogeographic region. Previous studies have shown that tree lineages colonized multiple edaphic environments and dispersed widely across Amazonia, leading to a hypothesis, which we test, that lineages should not be strongly associated with either geographic regions or edaphic forest types. Location Amazonia. Taxon A...
Aim To determine the relationships between the functional trait composition of forest communities and environmental gradients across scales and biomes and the role of species relative abundances in these relationships. Location Global. Time period Recent. Major taxa studied Trees. Methods We integrated species abundance records from worldwide forest inventories and associated functional traits (wood density, specific leaf area...
The tropical Pacific Ocean is characterized by its dominant zonal flow, strong climate dependence on the El Niño–Southern Oscillation (ENSO) and abundant tuna stocks. Tuna fisheries in the West and Central Pacific Ocean accounted for 55 % of the world-wide tuna catch in 2019 and are one of the main sources of income in many Pacific island nations. One of the dominant fishing methods in this region relies on the use of drifting...
The Toxicology Investigators Consortium 2022 Annual ReportNARA Subscribed
Giants of the Amazon: How does environmental variation drive the diversity patterns of large trees?NARA Subscribed
For more than three decades, major efforts in sampling and analyzing tree diversity in South America have focused almost exclusively on trees with stems of at least 10 and 2.5 cm diameter, showing highest species diversity in the wetter western and northern Amazon forests. By contrast, little attention has been paid to patterns and drivers of diversity in the largest canopy and emergent trees, which is surprising given these h...
Estimating trends and magnitudes of bycatch in the tuna fisheries of the Western and Central Pacific OceanNARA Subscribed
Minimising the unintended capture of fish, marine mammals, reptiles, seabirds and other marine organisms is an important component of responsible fisheries management and for stabilising declines and rebuilding populations of threatened species. The analyses presented were designed to establish the first quantitative baseline of historical catches, catch rates and species composition for the dominant tuna fisheries operating i...
Carrot genotypes differentially alter soil bacterial communities and decomposition of plant residue in soilNARA Subscribed
Purpose Farmers need alternative approaches to manage nitrogen (N) that meet crop needs while reducing loss to the environment. Identifying crop genotypes that promote decomposition of organic materials and understanding the potential mechanisms responsible could help address this challenge. Consequently, we aimed to 1) determine whether carrot genotypes differ in their potential to facilitate organic matter decomposition in s...