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Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Biogeochemical processes rendered by the aquatic microbiome could influence the development of cyanobacterial harmful algal blooms (cHABs), but those biotic factors are poorly understood and rarely considered. We focused on the link between microbial functions, community composition and environmental gradients along the Thames River–Lake St. Clair–Detroit River–Lake Erie corridor across different seasons. We measured the abund...
The range and frequency of pollinator movement, influences patterns of pollen dispersal with consequences for plant mating. It is predicted that pollination by birds promotes outcrossing and multiple paternity. Alternatively, pollination by insects or non-flying mammals (NFMs) is expected to increase inbreeding and correlation of paternity, leading to less genetically diverse and less vigorous seedlings. We tested these predic...
Ecological theory predicts that consumers should be co‐limited by resource quantity and quality, given widespread consumer‐resource nutritional imbalances. We used 25 estimates of annual community secondary production (ACSP) of stream macroinvertebrates to assess the relative roles of basal resource quantity (leaf litter standing stock [LLSS]) and quality (% nitrogen and % phosphorus of leaf litter) in modulating patterns of p...
The ocean plays an essential role in regulating Earth’s climate, influencing weather conditions, providing sustenance for large populations, moderating anthropogenic climate change, encompassing massive biodiversity, and sustaining the global economy. Human activities are changing the oceans, stressing ocean health, threatening the critical services the ocean provides to society, with significant consequences for human well-be...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
Dominance and rarity in tree communities across the globe: Patterns, predictors and threatsNARA Subscribed
Aim Ecological and anthropogenic factors shift the abundances of dominant and rare tree species within local forest communities, thus affecting species composition and ecosystem functioning. To inform forest and conservation management it is important to understand the drivers of dominance and rarity in local tree communities. We answer the following research questions: (1) What are the patterns of dominance and rarity in tree...
A pre‐Late Wisconsinan, post‐Illinoian, till sheet has long been recognized in north‐central Iowa, but has not been formally recognized or defined until now. Early researchers referred to these deposits as the ‘Tazewell’, and the term ‘Sheldon Creek’ was more recently used informally by the Iowa Geological Survey in guidebooks and reports. Recent mapping has extended the eastern margin significantly past previous interpretatio...
Geography and ecology shape the phylogenetic composition of Amazonian tree communitiesNARA Subscribed
Aim Amazonia hosts more tree species from numerous evolutionary lineages, both young and ancient, than any other biogeographic region. Previous studies have shown that tree lineages colonized multiple edaphic environments and dispersed widely across Amazonia, leading to a hypothesis, which we test, that lineages should not be strongly associated with either geographic regions or edaphic forest types. Location Amazonia. Taxon A...
Aim To determine the relationships between the functional trait composition of forest communities and environmental gradients across scales and biomes and the role of species relative abundances in these relationships. Location Global. Time period Recent. Major taxa studied Trees. Methods We integrated species abundance records from worldwide forest inventories and associated functional traits (wood density, specific leaf area...
Global dominance of lianas over trees is driven by forest disturbance, climate and topographyNARA Subscribed
Growing evidence suggests that liana competition with trees is threatening the global carbon sink by slowing the recovery of forests following disturbance. A recent theory based on local and regional evidence further proposes that the competitive success of lianas over trees is driven by interactions between forest disturbance and climate. We present the first global assessment of liana–tree relative performance in response to...
Assessing the linkage between breeding and non-breeding areas has important implications for understanding the fundamental biology of and conserving animal species. This is a challenging task for marine species, and in sea turtles a combination of stable isotope analysis (SIA) and satellite telemetry has been increasingly used. The Northwest Atlantic (NWA) loggerhead ( Caretta caretta ) Regional Management Unit, one of the lar...
Giants of the Amazon: How does environmental variation drive the diversity patterns of large trees?NARA Subscribed
For more than three decades, major efforts in sampling and analyzing tree diversity in South America have focused almost exclusively on trees with stems of at least 10 and 2.5 cm diameter, showing highest species diversity in the wetter western and northern Amazon forests. By contrast, little attention has been paid to patterns and drivers of diversity in the largest canopy and emergent trees, which is surprising given these h...
Geographic patterns of tree dispersal modes in Amazonia and their ecological correlatesNARA Subscribed
Aim To investigate the geographic patterns and ecological correlates in the geographic distribution of the most common tree dispersal modes in Amazonia (endozoochory, synzoochory, anemochory and hydrochory). We examined if the proportional abundance of these dispersal modes could be explained by the availability of dispersal agents (disperser‐availability hypothesis) and/or the availability of resources for constructing zoocho...
Aim Water availability is the major driver of tropical forest structure and dynamics. Most research has focused on the impacts of climatic water availability, whereas remarkably little is known about the influence of water table depth and excess soil water on forest processes. Nevertheless, given that plants take up water from the soil, the impacts of climatic water supply on plants are likely to be modulated by soil water con...
Tropical tree growth sensitivity to climate is driven by species intrinsic growth rate and leaf traitsNARA Subscribed
A better understanding of how climate affects growth in tree species is essential for improved predictions of forest dynamics under climate change. Long‐term climate averages (mean climate) drive spatial variations in species’ baseline growth rates, whereas deviations from these averages over time (anomalies) can create growth variation around the local baseline. However, the rarity of long‐term tree census data spanning clima...
Evolving immunogenicity assay performance expectations and a lack of harmonized anti-drug antibody validation testing and reporting tools have resulted in significant time spent by health authorities and sponsors on resolving filing queries. Following debate at the American Association of Pharmaceutical Sciences National Biotechnology Conference, a group was formed to address these gaps. Over the last 3 years, 44 members from...