Tim Smyth results 17
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Darkening of the Global OceanNARA Subscribed
The photic zones of the oceans—where sunlight and moonlight drive ecological interactions—are one of the most productive habitats on the planet and fundamental to the maintenance of healthy global biogeochemical cycles. Ocean darkening occurs when changes in the optical properties of the oceans reduce the depth to which sufficient light penetrates to facilitate biological processes guided by sunlight and moonlight. We analysed...
Pavement wear generates microplastics in stormwater runoffNARA Subscribed
This study presents a proof-of-concept for a fully automated and adaptive observing system for coastal ocean ecosystems. Such systems present a viable future observational framework for oceanography, reducing the cost and carbon footprint of marine research. An autonomous ocean robot (an ocean glider) was deployed for 11 weeks in the western English Channel and navigated by exchanging information with operational forecasting m...
The distribution of mycosporine-like amino acids in phytoplankton across a Southern Ocean transectOA Marine
Interactions between phytoplankton and ultraviolet radiation (UVR: 280 – 400 nm) are undergoing changes dictated by variability in ocean temperature, the depth of mixed layers, nutrient availability, and the thickness of the ozone layer. There are a variety of mechanisms for phytoplankton to cope with UVR stress, one of the most prevalent being the presence of mycosporine-like amino acids (MAAs). Despite the importance of thes...
The globally widespread adoption of Artificial Light at Night (ALAN) began in the mid‐20th century. Yet, it is only in the last decade that a renewed research focus has emerged into its impacts on ecological and biological processes in the marine environment that are guided by natural intensities, moon phase, natural light and dark cycles and daily light spectra alterations. The field has diversified rapidly from one restricte...
Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severityNARA Subscribed
The combined impact of common and rare exonic variants in COVID-19 host genetics is currently insufficiently understood. Here, common and rare variants from whole-exome sequencing data of about 4000 SARS-CoV-2-positive individuals were used to define an interpretable machine-learning model for predicting COVID-19 severity. First, variants were converted into separate sets of Boolean features, depending on the absence or the pr...
Increasing nutrient stress reduces the efficiency of energy transfer through planktonic size spectraNARA Subscribed
Size‐spectral approaches quantify the efficiency of energy transfer through food webs, but theory and field studies disagree over how changes in temperature, nutrients, and extreme weather impact on this efficiency. We address this at two scales: via 6 years of weekly sampling of the plankton size spectrum at the Plymouth L4 shelf sea site, and via a new, global‐scale, meta‐analysis of aquatic size spectra. The time series sho...
Increasing picocyanobacteria success in shelf waters contributes to long‐term food web degradationNARA Subscribed
Continental margins are disproportionally important for global primary production, fisheries and CO 2 uptake. However, across the Northeast Atlantic shelves, there has been an ongoing summertime decline of key biota—large diatoms, dinoflagellates and copepods—that traditionally fuel higher tropic levels such as fish, sea birds and marine mammals. Here, we combine multiple time series with in situ process studies to link these...
Atmospheric forcing applied as ocean model boundary conditions can have a critical impact on the quality of ocean forecasts. This paper assesses the sensitivity of an eddy-resolving (1.5 km resolution) regional ocean model of the north-west European Shelf (NWS) to the choice of atmospheric forcing and atmosphere–ocean coupling. The analysis is focused on a month-long simulation experiment for July 2014 and evaluation of simula...
Comment. What drives plankton seasonality in a stratifying shelf sea? Some competing and complementary theoriesNARA Subscribed
The Plymouth L4 time plankton series in the Western English Channel is a textbook example of a shallow, stratifying shelf sea system. Over its 30 yr of weekly sampling, this site has provided a diverse and contrasting suite of numerical and conceptual models of plankton bloom formation, phenology, and seasonal succession. The most recent of these papers, Kenitz et al. (2017) has initiated this comment, partly because we feel t...
Why artificial light at night should be a focus for global change research in the 21st centuryNARA Subscribed
The environmental impacts of artificial light at night have been a rapidly growing field of global change science in recent years. Yet, light pollution has not achieved parity with other global change phenomena in the level of concern and interest it receives from the scientific community, government and nongovernmental organizations. This is despite the globally widespread, expanding and changing nature of night‐time lighting...
Summary Very few marine microbial communities are well characterized even with the weight of research effort presently devoted to it. Only a small proportion of this effort has been aimed at investigating temporal community structure. Here we present the first report of the application of high‐throughput pyrosequencing to investigate intra‐annual bacterial community structure. Microbial diversity was determined for 12 time poi...
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