Ports are key gateways for the introduction and spread of non-indigenous species (NIS), yet the ecological and genetic temporal dynamics of these introductions remain poorly understood. Long term temporal monitoring is essential to unravel invasion processes, anticipate biodiversity shifts, and inform effective management and biosecurity strategies. In this study, we conducted a five-year (2019-2024) monthly metabarcoding surv...

The dynamic balance between primary production and herbivory is key to the resilience of plant‐dominated ecosystems across the world. However, many vegetated ecosystems are becoming increasingly susceptible to herbivore‐triggered collapses, as this balance is disrupted due to predator declines, increasing nutrients, and other interacting impacts of global change. Yet without accessible, cost‐effective tools to evaluate the pro...

Studying the early stages of the introduction of non-indigenous species (NIS) is crucial as it allows immediate management actions aimed at preventing NIS spread at a time when these actions are more likely to be effective. Recent species introductions present unique opportunities to study key aspects of the invasion process. However, comprehensive information on how and when NIS are first introduced remains rare. We assessed...

Invasive species are one of the main threats to global biodiversity and, within marine ecosystems, tunicates feature some prominent examples. Styela plicata is an ascidian species inhabiting harbours in all temperate oceans and seas, thus being considered a thriving invasive species. However, this species' adaptive mechanisms, introduction history, and population structure have never been completely elucidated. Here, by genoty...

Against the accelerating pace of worldwide species extinction, reliable biodiversity assessments are critical, both as baselines and to track potential declines. DNA metabarcoding techniques allow for fast and comprehensive assessment of biodiversity in both terrestrial and marine habitats. However, these methods need to be adapted and standardised for each ecosystem in order to be effective. Seagrass meadows are among the mos...

Aim It has been predicted that there should be concordance between biogeographical and phylogeographical processes structuring multi‐species regional assemblages. We hypothesise that oceanographic barriers in the marine environment affect concomitantly the distribution and the connectivity of the marine biota, thus producing congruent biogeographical and phylogeographical structures. We also predict that macro‐ and meio‐eukary...

Population genomic studies have increased in the last decade, showing great potential to understand the evolutionary patterns in a great variety of organisms, mostly relying on RAD sequencing techniques to obtain reduced representations of the genomes. Among them, 2b-RAD can provide further secondary reduction to adjust experimental costs by using base-selective adaptors, although its impact on genotyping is unknown. Here we p...

Global environmental changes may have a profound impact on ecosystems. In this context, it is crucial to gather biological and ecological information of the main species in marine communities to predict and mitigate potential effects of shifts in their distribution, abundance, and interactions. Using genotyping by sequencing (GBS), we assessed the genetic structure of a keystone species in the Mediterranean shallow littoral ec...

In the marine realm, biomonitoring using environmental DNA (eDNA) of benthic communities requires destructive direct sampling or the setting‐up of settlement structures. Comparatively much less effort is required to sample the water column, which can be accessed remotely. In this study we assess the feasibility of obtaining information from the eukaryotic benthic communities by sampling the adjacent water layer. We studied two...

Spatial and temporal variation of environmental parameters can affect dispersal, recruitment and population persistence of marine benthic species. Studies including inter-annual comparisons of genetic structure often indicate high/moderate temporal heterogeneity in marine invertebrates, which may be a prevailing pattern. This suggests that temporal studies are necessary to understand the dynamics of marine metapopulations. In...

Information about the genomic processes underlying responses to temperature changes is still limited in non‐model marine invertebrates. In this sense, transcriptomic analyses can help to identify genes potentially related to thermal responses. We here investigated, via RNA‐seq, whole‐transcriptomic responses to increased and decreased temperatures in a thermophilous keystone sea urchin, Arbacia lixula , whose populations are i...