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Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Optical characterization of dissolved organic carbon (DOC) freshly collected from the circumneutral “white water” of the Rio Solimoes revealed that it had lower aromaticity, lower molecular weight, and a greater autochthonous content than DOC from the acidic “black water” of the Rio Negro. The tambaqui ( Colossoma macropomum ), a characid member of the Serrasalmidae, is a model neotropical fish that migrates annually between t...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
To assess how the quality and properties of the natural dissolved organic carbon (DOC) could drive different effects on gill physiology, we analysed the ionoregulatory responses of a native Amazonian fish species, the tambaqui Colossoma macropomum , to the presence of dissolved organic carbon (DOC; 10 mg l −1 ) at both pH 7.0 and pH 4.0 in ion‐poor water. The DOC was isolated from black water from São Gabriel da Cachoeira (SGC...
Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N 2 O emissionsNARA Subscribed
Simulation models are extensively used to predict agricultural productivity and greenhouse gas emissions. However, the uncertainties of (reduced) model ensemble simulations have not been assessed systematically for variables affecting food security and climate change mitigation, within multi‐species agricultural contexts. We report an international model comparison and benchmarking exercise, showing the potential of multi‐mode...
Diversity of primary producer is often surprisingly high, despite few limiting factors such as nutrients and light to facilitate species coexistence. In theory, the presence of herbivores could increase the diversity of primary producers, resolving this “paradox of the plankton.” Little experimental evidence supports this natural enemies hypothesis, but previous tests suffer from several deficiencies. Previous experiments ofte...
Stoichiometric regulation of phytoplankton toxinsNARA Subscribed
Ecological Stoichiometry theory predicts that the production, elemental structure and cellular content of biomolecules should depend on the relative availability of resources and the elemental composition of their producer organism. We review the extent to which carbon‐ and nitrogen‐rich phytoplankton toxins are regulated by nutrient limitation and cellular stoichiometry. Consistent with theory, we show that nitrogen limitatio...
Industrial‐strength ecology: trade‐offs and opportunities in algal biofuel productionNARA Subscribed
Microalgae represent one of the most promising groups of candidate organisms for replacing fossil fuels with contemporary primary production as a renewable source of energy. Algae can produce many times more biomass per unit area than terrestrial crop plants, easing the competing demands for land with food crops and native ecosystems. However, several aspects of algal biology present unique challenges to the industrial‐scale a...
Global assessment of experimental climate warming on tundra vegetation: heterogeneity over space and timeNARA Subscribed
Ecology Letters (2011) Abstract Understanding the sensitivity of tundra vegetation to climate warming is critical to forecasting future biodiversity and vegetation feedbacks to climate. In situ warming experiments accelerate climate change on a small scale to forecast responses of local plant communities. Limitations of this approach include the apparent site‐specificity of results and uncertainty about the power of short‐term...
Responses of estuarine and coastal marine phytoplankton to nitrogen and phosphorus enrichmentNARA Subscribed
A cross‐ecosystem comparison of data obtained from 92 coastal zone ecosystems worldwide revealed a strong positive response of marine phytoplankton biomass to nutrient enrichment that is highly consistent with the general patterns reported previously in the limnological literature for freshwater lakes and reservoirs. Average concentrations of chlorophyll a in estuarine and coastal marine systems were strongly dependent on the...