Yang-Rui Li results 20
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Cynoglossus semilaevis parvovirus (CsPV) is an important pathogen that poses a serious threat to the aquaculture industry. In the absence of vaccines and effective therapeutic drugs, early and sensitive detection of the pathogen is the key measure to prevent and control the outbreaks and epidemics of viral diseases. Currently, the existing detection methods for CsPV are expensive and rely on specialized operations, limiting th...
A New Species of Diaporthe Section Betulicola (Diaporthomycetidae, Diaporthales) From ChinaNARA Subscribed
A new species in Diaporthaceae, Diaporthe fengtaiensis sp. nov., is described and illustrated from Southwestern China. A comparative morpho‐anatomical study and multilocus phylogenetic analysis (ITS, CAL , HIS , TEF1‐α , TUB2 ) confirmed its position within the section Betulicola of the genus Diaporthe . The taxon is characterized by immersed ascomata (270–420 × 290–410 µm), relatively large asci (70–115 × 9.5–13.5 µm), and 1‐...
The phylum Acanthocephala is a ubiquitous group of zooparasites, with major socio‐economic importance. The true diversity of the Acanthocephala is obscured by the phenomena of cryptic speciation and a large degree of intraspecific variation. In this study we describe an example of extreme phenotypic variation in neck morphology. The pomphorhynchid acanthocephalans, Longicollum pagrosomi and Pomphorhynchus zhoushanensis were or...
Effect of primate protection on threatened and endemic vertebrates, plants, ecosystem services, and future climate refugiaNARA Subscribed
Primates, 69% of which are threatened with extinction, are the third most specious order of mammals. We used primates as model taxa to examine the umbrella effects of primates on ecosystem services and the protection of other vertebrates and seed plants in Yunnan Province, China. We identified areas of conservation priority for 16 primate species and determined which other threatened and endemic terrestrial vertebrates and see...
The study investigated the potential alleviating effect of sodium butyrate (SB) on intestinal injuries caused by glycinin in the diet of common carp. Fish were divided into six groups: a control group (without glycinin and SB), a Gly group (with glycinin), and four groups supplemented with different doses of SB (0.75, 1.50, 2.25, and 3.00 g/kg) based on the Gly group. All diets were isonitrogenous and isoenergetic, and the fis...
Monsoon Climate and Anthropogenic Influences Shape Primate Distributions Across the Southeastern Edge of the Qinghai‐Tibet PlateauNARA Subscribed
The southeastern edge of the Qinghai‐Tibet Plateau (Yunnan, China) exhibits high biodiversity but stark differences in species richness between its western Longitudinal Range Gorge (LRG) and eastern Yunnan Plateau (YP). We collected distribution data for 16 primate species in Yunnan and analyzed palynological records over the past 20 ka from 21 localities to identify the biogeographic, climatic, and anthropogenic factors that...
Aim Plant invasions are a global problem that requires studying plants and their environmental associations across native and introduced ranges. Location 2000 km transects in China, Europe and North America. Time Period June 2019–July 2020. Major Taxa Studied Japanese knotweed ( Reynoutria japonica ). Methods We surveyed 150 populations of Japanese knotweed, a noxious invader of the temperate zone, along 2000 km transects in n...
Phylogenetic origin of an insect fauna at the boundary of the Palaearctic and Oriental realms: Evidence from ‘site‐based’ mitogenomicsNARA Subscribed
Aim Knowledge of taxonomy and species distributions in highly diverse lineages of invertebrates remains too incomplete for the study of biogeographical patterns at the global scale. This limits the understanding of processes leading to the formation and maintenance of boundaries between major biogeographical realms. Site‐based metagenomic approaches may provide an alternative source of data for inference of historical processe...
Losses of low‐germinating, slow‐growing species prevent grassland composition recovery from nutrient amendmentNARA Subscribed
Nutrient enrichment often alters the biomass and species composition of plant communities, but the extent to which these changes are reversible after the cessation of nutrient addition is not well‐understood. Our 22‐year experiment (15 years for nutrient addition and 7 years for recovery), conducted in an alpine meadow, showed that soil nitrogen concentration and pH recovered rapidly after cessation of nutrient addition. Howev...
Human activity and climate change accelerate the extinction risk to non‐human primates in ChinaNARA Subscribed
Human activity and climate change affect biodiversity and cause species range shifts, contractions, and expansions. Globally, human activities and climate change have emerged as persistent threats to biodiversity, leading to approximately 68% of the ~522 primate species being threatened with extinction. Here, we used habitat suitability models and integrated data on human population density, gross domestic product (GDP), road...
Ferroptosis induced by the biocontrol agent Pythium oligandrum enhances soybean resistance to Phytophthora sojaeNARA Subscribed
Ferroptosis is a newly discovered form of cell death accompanied by iron accumulation and lipid peroxidation. Both biotic and abiotic stresses can induce ferroptosis in plant cells. In the case of plant interactions with pathogenic Phytophthora oomycetes, the roles of ferroptosis are still largely unknown. Here, we performed transcriptome analysis on soybean plants treated with the biocontrol agent Pythium oligandrum , a soilb...
Summary Aspergillus flavus is an opportunistic fungal pathogen that colonizes agriculture crops with aflatoxin contamination. We found that Perillaldehyde (PAE) effectively inhibited A . flavus viability and aflatoxin production by inducing excess reactive oxygen species (ROS). Transcriptome analysis indicated that the Gα protein FadA was significantly induced by PAE. Functional characterization of FadA showed it is important...
Metabolic potentials of members of the class Acidobacteriia in metal‐contaminated soils revealed by metagenomic analysisNARA Subscribed
Summary The relative abundance of Acidobacteriia correlated positively with the concentrations of arsenic (As), mercury (Hg), chromium (Cr), copper (Cu) and other metals, suggesting their adaptation of the metal‐rich environments. Metagenomic binning reconstructed 29 high‐quality metagenome‐assembled genomes (MAGs) associated with Acidobacteriia , providing an opportunity to study their metabolic potentials. These MAGs contain...
Aim The Sino‐Japanese Floristic Region has extremely high species diversity with respect to temperate plants; however, the reasons for this diversity are poorly understood because most studies have only considered geographic isolation caused by climatic oscillations. In some plant groups, high floral trait diversity and uneven species diversity between insular systems and the continental area suggest other factors may have imp...
Pseudomonas aeruginosa antitoxin HigA functions as a diverse regulatory factor by recognizing specific pseudopalindromic DNA motifsNARA Subscribed
Summary Type II toxin‐antitoxin (TA) systems modulate many essential cellular processes in prokaryotic organisms. Recent studies indicate certain type II antitoxins also transcriptionally regulate other genes, besides neutralizing toxin activity. Herein, we investigated the diverse transcriptional repression properties of type II TA antitoxin PaHigA from Pseudomonas aeruginosa . Biochemical and functional analyses showed that...
Aquaculture is a fast‐growing and rapidly expanding industry in the world. Probiotics are widely used in aquaculture and have provided benefits to aquatic animal health, and it is also a promising alternative to antibiotics for control of fish diseases. With the development of biotechnology, new expression systems and novel techniques for the surface display of heterologous proteins in surface of probiotics cells have been dev...
Diversification of mitogenomes in three sympatric Altica flea beetles (Insecta, Chrysomelidae)NARA Subscribed
The Asian flea beetles Altica cirsicola , Altica fragariae and Altica viridicyanea are broadly sympatric and morphologically highly similar but feed on distantly related host plants. They have been suggested as a model for ecological speciation studies. However, their phylogeny and species limits remain uncertain. In this study, we added mitochondrial genomes from multiple individuals of each species to the growing database. P...
Summary Colorectal cancer (CRC) is a common disease worldwide that is strongly associated with the gut microbiota. However, little is known regarding the gut microbiota after surgical treatment. 16S rRNA gene sequencing was used to evaluate differences in gut microbiota among colorectal adenoma patients, CRC patients, CRC postoperative patients and healthy controls by comparing gut microbiota diversity, overall composition and...
Summary Ganoderma lucidum is one of the most important medicinal fungi, but the lack of basic study on the fungus has hindered the further development of its value. To investigate the roles of the redox system in G. lucidum , acetic acid (HAc) was applied as a reactive oxygen species (ROS) stress inducer, and hydrogen‐rich water (HRW) was used to relieve the ROS stress in this study. Our results demonstrate that the treatment...
Diversity, abundance and characterization of ruminal cysteine phytases suggest their important role in phytate degradationNARA Subscribed
Summary A novel class of cysteine phytase showing ability to degrade phytate has recently been isolated from rumen bacteria. To expand our knowledge of this enzyme class, a total of 101 distinct cysteine phytase gene fragments were identified from the ruminal genomic DNA of Bore goats and Holstein cows, and most of them shared low identities (
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