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High‐Throughput Sequencing in Aquaculture Disease Investigations: Challenges and Opportunities for ImplementationNARA Subscribed
The current generation of sequencing technologies can produce terabases of data with exceptional accuracy and speed, at a fraction of the cost of older methods. Despite this unprecedented power, adoption into aquaculture health management presents several challenges, including identifying where such capability may be optimally deployed. Here we synthesise discussions from a structured expert workshop held at the 2025 Aotearoa...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Did you know? State-of-the-art preprocessing diffusion MRI data can improve tractographyNARA Subscribed
Diffusion MRI fiber tractography is sensitive to noise and artifacts in diffusion-weighted images, and these challenges can propagate into fiber-orientation estimation and the tractography process. In this “Did You Know” communication, we synthesize evidence that state-of-the-art preprocessing improves tractography anatomical fidelity and test-retest reproducibility compared to minimally processed data. We summarize best-pract...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Molecular taxonomy of the guitarfish genus Acroteriobatus (Rhinopristiformes: Rhinobatidae)NARA Subscribed
Guitarfish species (genus Acroteriobatus ) display restricted distributions in undermanaged regions of intense fishing pressure. The importance of accurate specimen identification is well established, especially in the context of conservation management. However, guitarfishes remain poorly understood, which is exacerbated by taxonomic uncertainty due to morphological similarity. We therefore aimed (1) to identify molecular ope...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
Plans for expanding protected area systems (prioritizations) need to fulfill conservation objectives. They also need to account for other factors, such as economic feasibility and anthropogenic land‐use requirements. Although prioritizations are often generated with decision support tools, most tools have limitations that hinder their use for decision‐making. We outlined how the prioritizr R package ( https://prioritizr.net )...
Challenges in assessing the effects of environmental governance systems on conservation outcomesNARA Subscribed
Effective governance is crucial for the success of conservation projects aimed at protecting wildlife populations and supporting human well‐being. However, few large‐scale, comprehensive syntheses have been conducted on the effects of different environmental governance types on conservation outcomes (i.e., biological and ecological effectiveness or effects of conservation on human well‐being), and clarity on the quantity and q...
Knowledge co-production for identifying indicators and prioritising solutions for food and land system sustainability in AustraliaNARA Subscribed
Achieving sustainable Australian food and land systems requires the rapid implementation and scaling up of a broad suite of solutions to meet the Sustainable Development Goals (SDGs). Decision-making frameworks are needed to identify suitable indicators and prioritise solutions at national scales to inform sustainability transitions. Using a knowledge co-production framework, we convened 150 stakeholders from 100 + organisatio...
As ocean warming threatens reefs worldwide, identifying corals with adaptations to higher temperatures is critical for conservation. Genetically distinct but morphologically similar (i.e. cryptic) coral populations can be specialized to extreme habitats and thrive under stressful conditions. These corals often associate with locally beneficial microbiota (Symbiodiniaceae photobionts and bacteria), obscuring the main drivers of...
Sustainable coffee: A review of the diverse initiatives and governance dimensions of global coffee supply chainsNARA Subscribed
With a global footprint of 10 million hectares across 12.5 million farms, coffee is among the world’s most traded commodities. The coffee industry has launched a variety of initiatives designed to reduce coffee’s contribution to climate change and biodiversity loss and enhance the socio-economic conditions of coffee producers. We systematically reviewed the literature on the sustainability and governance of coffee production a...
Review of terrestrial temporarily conserved areas in Canada, the United States, and MexicoNARA Subscribed
The establishment of protected areas is a cornerstone of conservation, but permanent protection could be inefficient or even impossible in some situations. We synthesized the literature on temporarily conserved areas (TCAs) across Canada, the United States, and Mexico. We used a comprehensive search string to retrieve peer‐reviewed articles published from 2000 to 2021 from the Web of Science. We identified 27 relevant peer‐rev...