P. Vaughn results 33
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Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
Grapevine leafroll disease (GLD) affects grapevines worldwide. The primary causal agent of GLD is grapevine leafroll-associated virus 3 (GLRaV-3), which spreads to uninfected grapevines via mealybugs and soft-scale insects. Pseudococcus calceolariae (Hemiptera: Pseudococcidae) is a mealybug vector of GLRaV-3 in New Zealand. P. calceolariae also colonizes clovers ( Trifolium spp.) growing naturally as vineyard ground cover. Sep...
Submarine groundwater discharge (SGD) is a recognized contributor to the hydrological and biogeochemical functioning of coral reef ecosystems located along coastlines. However, the distribution, size, and thermal properties of SGD remain poorly understood at most land–reef margins. We developed, deployed, and demonstrated an operational method for airborne detection and mapping of SGD using the 200 km coastline of western Hawa...
An Improved Framework for Estimating Organic Carbon Content of Mangrove Soils Using loss-on-ignition and Coastal Environmental SettingNARA Subscribed
The use of loss on ignition (LOI) measurements of soil organic matter (SOM) to estimate soil organic carbon (OC) content is a decades-old practice. While there are limitations and uncertainties to this approach, it continues to be necessary for many coastal wetlands researchers and conservation practitioners without access to an elemental analyzer. Multiple measurement, reporting, and verification (MRV) standards recognize the...
Over the past decade, coral restoration efforts have increased as reefs continue to decline at unprecedented rates. Identifying suitable coral outplanting locations to maximize coral survival continues to be one of the biggest challenges for restoration practitioners. Here, we demonstrate methods of using derivatives from imaging spectroscopy from the Global Airborne Observatory (GAO) to identify suitable coral outplant sites...
Coral reefs are undergoing changes caused by coastal development, resource use, and climate change. The extent and rate of reef change demand robust and spatially explicit monitoring to support management and conservation decision-making. We developed and demonstrated an airborne-assisted approach to design and upscale field surveys of reef fish over an ecologically complex reef ecosystem along Hawai‘i Island. We also determin...
Reef rugosity, a metric of three-dimensional habitat complexity, is a central determinant of reef condition and multi-trophic occupancy including corals, fishes and invertebrates. As a result, spatially explicit information on reef rugosity is needed for conservation and management activities ranging from fisheries to coral protection and restoration. Across archipelagos comprising islands of varying geologic stage and age, ru...
Using spatially explicit, time‐dependent analysis to understand how social factors influence conservation outcomesNARA Subscribed
Conservation across human‐dominated landscapes requires an understanding of the social and ecological factors driving outcomes. Studies that link conservation outcomes to social and ecological factors have examined temporally static patterns. However, there may be different social and ecological processes driving increases and decreases in conservation outcomes that can only be revealed through temporal analyses. Through a cas...
Outside the envelope: rare events disrupt the relationshipbetween climate factors and species interactionsNARA Subscribed
The order in which species arrive during community assembly can be an important driver of community composition and function. However, the strength of these priority effects can be variable, in part because of strong site and year effects. To understand how priority effects vary in importance with abiotic conditions, we initiated identical community assembly experiments in which we varied the timing of arrival of native and ex...
Do invasive species perform better in their new ranges?NARA Subscribed
A fundamental assumption in invasion biology is that most invasive species exhibit enhanced performance in their introduced range relative to their home ranges. This idea has given rise to numerous hypotheses explaining “invasion success” by virtue of altered ecological and evolutionary pressures. There are surprisingly few data, however, testing the underlying assumption that the performance of introduced populations, includi...