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Cynoglossus semilaevis parvovirus (CsPV) is an important pathogen that poses a serious threat to the aquaculture industry. In the absence of vaccines and effective therapeutic drugs, early and sensitive detection of the pathogen is the key measure to prevent and control the outbreaks and epidemics of viral diseases. Currently, the existing detection methods for CsPV are expensive and rely on specialized operations, limiting th...
Viruses are ubiquitous biological entities with important roles in microbial mortality, genetic exchange and biogeochemical cycles. Clays, the most abundant mineral constituents on Earth, function as highly effective adsorbents for viruses, critically modulating their environmental persistence and ecological impact. However, the mechanisms and environmental drivers governing virus–clay interactions remain poorly understood. Th...
Micro‐Refuges or Ecological Traps: Context‐Dependent Effects of Rock Pools on Intertidal Biodiversity Across LatitudesNARA Subscribed
Aim We investigated how local‐scale environmental heterogeneity influences biodiversity patterns across broad biogeographic gradients, using intertidal microhabitats as a model system within one of the most environmentally stressful ecosystems on Earth. Location Intertidal habitats at 26 locations (two rocky shore sites per location) across six continents, spanning 98° of latitude (38°S to 60°N). Time Period 2019–2022. Major T...
Does Water Rights Reform Reduce Water Usage for Agriculture? Evidence From City‐Level Panel Data in ChinaNARA Subscribed
Existing policies promoting agricultural water conservation focus mainly on promoting water‐saving irrigation through subsidy policies, but this approach leads to a rebound effect, making obtaining the desired water‐saving result challenging. Moreover, many countries have begun to realize that the market‐oriented allocation of water resources through water rights reform (WRR) may be a more effective way of managing water resou...
Aim Understanding the spatial distribution of genetic variation within species is a central tenet in evolutionary biology and conservation biology. This study explores how historical demographic processes and/or environmental factors interact to affect contemporary genetic variation and adaptive potential, with a specific focus on testing the ‘centre‐periphery’ hypothesis (CPH). Location Subtropical China. Taxon Liquidambar. M...
Motivation Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R packag...
Aim The impact of Pleistocene climate fluctuations on the biogeographical history of aquatic species has been a topic of enduring debate. This issue poses particular challenges for parapatric closely related species, especially those situated in transition zones where species assemblages occur between distinct zoogeographic boundaries. Location Eastern China. Taxon Five closely related Sinopotamon species and subspecies, S. sh...
Phylogenetic origin of an insect fauna at the boundary of the Palaearctic and Oriental realms: Evidence from ‘site‐based’ mitogenomicsNARA Subscribed
Aim Knowledge of taxonomy and species distributions in highly diverse lineages of invertebrates remains too incomplete for the study of biogeographical patterns at the global scale. This limits the understanding of processes leading to the formation and maintenance of boundaries between major biogeographical realms. Site‐based metagenomic approaches may provide an alternative source of data for inference of historical processe...
Power law in species–area relationship overestimates bacterial diversity in grassland soils at larger scalesNARA Subscribed
Aim Species–area relationships (SAR) are widely utilized for estimating the species richness and its spatial turnover across various scales. Despite the prevalent characterization of SAR using the power law in many microbial community studies, its efficacy remains unvalidated. This study aims to characterize the microbial SAR and its mechanisms in alpine grassland soils on the Qinghai‐Tibet Plateau (QTP). Location Qinghai‐Tibe...
Salinity as a key factor affecting viral activity and life strategies in alpine lakesNARA Subscribed
Viruses are major players in the biosphere, yet little is known about their dynamics and life strategies in alpine lakes, particularly those on the Tibetan Plateau. We investigated microbial abundance, viral dynamics, and viral life strategies in 10 high‐altitude Tibetan lakes and found that they harbor high levels of active viruses. Salinity was identified as a crucial factor influencing viral abundance, dynamics, as well as...
Phylogenetic distance–decay patterns are not explained by local community assembly processes in freshwater lake microbial communitiesNARA Subscribed
While water and sediment microbial communities exhibit pronounced spatio‐temporal patterns in freshwater lakes, the underlying drivers are yet poorly understood. Here, we evaluated the importance of spatial and temporal variation in abiotic environmental factors for bacterial and microeukaryotic community assembly and distance–decay relationships in water and sediment niches in Hongze Lake. By sampling across the whole lake du...
Diversity of Fusarium community assembly shapes mycotoxin accumulation of diseased wheat headsNARA Subscribed
Fusarium head blight (FHB) is a major disease worldwide on cultivated cereals, caused by several Fusarium species. FHB can cause not only yield reduction but also accumulation of mycotoxins in the grain contaminating the food supply. Much of the earlier research has focused on Fusarium pathogenesis, conditions required for disease development and toxin accumulation, and FHB management. However, the Fusarium community compositi...
Canopy height, rather than neighborhood effects, shapes leaf herbivory in a tropical rainforestNARA Subscribed
Factors shaping the interspecific variations in herbivory have puzzled ecologists for decades and several hypotheses have been proposed to explain interspecific variation in leaf herbivory. In a tropical rainforest in Yunnan Province, China, we collected 6732 leaves from 129 species with canopy heights ranging from 1.6 to 65.0 m above the ground. We tested the role of canopy height, the diversity, composition and structural he...
Species of fast bulk‐soil nutrient cycling have lower rhizosphere effects: A nutrient spectrum of rhizosphere effectsNARA Subscribed
Tree roots not only acquire readily‐usable soil nutrients but also affect microbial decomposition and manipulate nutrient availability in their surrounding soils, that is, rhizosphere effects (REs). Thus, REs challenge the basic understanding of how plants adapt to the environment and co‐exist with other species. Yet, how REs vary among species in response to species‐specific bulk soil nutrient cycling is not well‐known. Here,...
Will climate change cause the global peatland to expand or contract? Evidence from the habitat shift pattern of Sphagnum mossesNARA Subscribed
Peatlands play a crucial role in the global carbon cycle. Sphagnum mosses (peat mosses) are considered to be the peatland ecosystem engineers and contribute to the carbon accumulation in the peatland ecosystems. As cold‐adapted species, the dominance of Sphagnum mosses in peatlands will be threatened by climate warming. The response of Sphagnum mosses to climate change is closely related to the future trajectory of carbon flux...
Nitrogen repression of deoxynivalenol biosynthesis is mediated by Mep2 ammonium permease in Fusarium graminearumNARA Subscribed
Fusarium graminearum is an important wheat pathogen and a producer of deoxynivalenol (DON). Biosynthesis of DON is suppressed by ammonium and induced by arginine and polyamines. To better understand ammonium repression of DON biosynthesis, in this study, we functionally characterized three ammonium permease ( MEP ) genes in F. graminearum . All the mep deletion mutants were normal in growth on V8 agar. Whereas deletion of MEP1...
Horizontally transferred genes (HTGs) play a key role in animal symbiosis, and some horizontally transferred genes or proteins are highly expressed in specialized host cells (bacteriocytes). However, it is not clear how HTGs are regulated, but microRNAs (miRNAs) are prime candidates given their previously demonstrated roles in symbiosis and impacts on the expression of host genes. A horizontally acquired PanBC that is highly e...
Epigallocatechin‐3‐gallate inhibits replication of white spot syndrome virus in the freshwater crayfish Procambarus clarkiiNARA Subscribed
The freshwater crayfish Procambarus clarkii is native to North America and Mexico, and it was introduced to China in 1929. The production and consumption of P. clarkii in China are the highest worldwide, reaching 208.96 million tons in 2020. The white spot syndrome virus (WSSV) is a major pathogen that affects shrimp, crayfish, crabs and lobsters, and it has caused widespread loss to the P. clarkii industry. Epigallocatechin‐3...
Metabolic potentials of members of the class Acidobacteriia in metal‐contaminated soils revealed by metagenomic analysisNARA Subscribed
Summary The relative abundance of Acidobacteriia correlated positively with the concentrations of arsenic (As), mercury (Hg), chromium (Cr), copper (Cu) and other metals, suggesting their adaptation of the metal‐rich environments. Metagenomic binning reconstructed 29 high‐quality metagenome‐assembled genomes (MAGs) associated with Acidobacteriia , providing an opportunity to study their metabolic potentials. These MAGs contain...
Vertical influence of temperature and precipitation on snow cover variability in the Yarlung Zangbo River basin, ChinaNARA Subscribed
Seasonal snow cover in mountainous areas is a key source of water for downstream regions. The snow cover area (SCA) in the Northern Hemisphere has significantly decreased during the past decades in response to global warming. Therefore, it is necessary to investigate the primary factors controlling the spatiotemporal variabilities in the SCA in high altitude regions. In this study, based on remote sensing data of SCA, temperat...
Summary A LuxI/R‐like quorum sensing (QS) system (AfeI/R) has been reported in the acidophilic and chemoautotrophic Acidithiobacillus spp. However, the function of AfeI/R remains unclear because of the difficulties in the genetic manipulation of these bacteria. Here, we constructed different afeI mutants of the sulfur‐ and iron‐oxidizer A . ferrooxidans , identified the N‐acyl homoserine lactones (acyl‐HSLs) synthesized by Afe...
Elevated atmospheric CO 2 reduces yield‐scaled N 2 O fluxes from subtropical rice systems: Six site‐years field experimentsNARA Subscribed
Increasing levels of atmospheric CO 2 are expected to enhance crop yields and alter soil greenhouse gas fluxes from rice paddies. While elevated CO 2 ( ) effects on CH 4 emissions from rice paddies have been studied in some detail, little is known how might affect N 2 O fluxes or yield‐scaled emissions. Here, we report on a multi‐site, multi‐year in‐situ FACE (free‐air CO 2 enrichment) study, aiming to determine N 2 O fluxes a...
QsvR integrates into quorum sensing circuit to control Vibrio parahaemolyticus virulenceNARA Subscribed
Summary Vibrio parahaemolyticus , the leading cause of seafood‐associated gastroenteritis worldwide, requires the two type‐III secretion systems (T3SS1 and T3SS2) and a thermostable direct hemolysin (encoded by tdh1 and tdh2 ) for full virulence. The tdh genes and the T3SS2 gene cluster constitute an 80 kb pathogenicity island known as Vp‐PAI located on the chromosome II. Expression of T3SS1 and Vp‐PAI is regulated in a quorum...