Rui-Rui Li results 79
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Rapid Screening of Bacterial Chemoeffectors of Pseudomonas parafulva Using a CheA ATPase Activity‐Based AssayNARA Subscribed
Bacterial chemotaxis enables cells to move in gradients of environmental signals that are sensed by chemoreceptors. A major limitation in the field consists currently in the lacking information on the signal(s) or chemoeffectors recognized by the majority of chemoreceptors, which in turn hampers understanding of how the environment has shaped chemotactic capabilities. A number of different approaches for signal identification...
Cynoglossus semilaevis parvovirus (CsPV) is an important pathogen that poses a serious threat to the aquaculture industry. In the absence of vaccines and effective therapeutic drugs, early and sensitive detection of the pathogen is the key measure to prevent and control the outbreaks and epidemics of viral diseases. Currently, the existing detection methods for CsPV are expensive and rely on specialized operations, limiting th...
Intensifying ocean stratification reduces vertical phosphate supply and carbon sink magnitudeNARA Subscribed
In recent decades, global warming‐driven ocean stratification has profoundly affected nutrient cycling. As the largest marginal sea in the northwestern Pacific, the South China Sea (SCS) provides a representative setting to examine these responses. Based on two decades of temperature, salinity, and nutrient datasets, we quantified the evolution of stratification in the SCS, its impacts on the upward transport of deep‐water pho...
We herein constructed a phylogeny of Lepidoptera synthesizing multiple information types, a phylogenomics backbone, a multigene supermatrix with species‐comprehensive DNA barcodes, and topological information from a compiled database of standardized machine‐readable trees from over 100 previous studies. We then applied the new phylogenetic synthesis as a profiling framework for a large DNA barcode dataset of caterpillars from...
A New Species of Diaporthe Section Betulicola (Diaporthomycetidae, Diaporthales) From ChinaNARA Subscribed
A new species in Diaporthaceae, Diaporthe fengtaiensis sp. nov., is described and illustrated from Southwestern China. A comparative morpho‐anatomical study and multilocus phylogenetic analysis (ITS, CAL , HIS , TEF1‐α , TUB2 ) confirmed its position within the section Betulicola of the genus Diaporthe . The taxon is characterized by immersed ascomata (270–420 × 290–410 µm), relatively large asci (70–115 × 9.5–13.5 µm), and 1‐...
Micro‐Refuges or Ecological Traps: Context‐Dependent Effects of Rock Pools on Intertidal Biodiversity Across LatitudesNARA Subscribed
Aim We investigated how local‐scale environmental heterogeneity influences biodiversity patterns across broad biogeographic gradients, using intertidal microhabitats as a model system within one of the most environmentally stressful ecosystems on Earth. Location Intertidal habitats at 26 locations (two rocky shore sites per location) across six continents, spanning 98° of latitude (38°S to 60°N). Time Period 2019–2022. Major T...
Mechanisms of Fish Intestinal Damage Under Environmental Stress: Insights From Carbonate Saline–Alkali Water PerspectiveNARA Subscribed
The intestinal tract is an important functional organ in fish, as it plays a key role in digestion and absorption, mucosal immunity, endocrine function, and metabolism. Therefore, damage to this organ greatly impacts fish health. This injury is usually associated with a poor aquaculture water environment, stressful conditions, and pathogen presence. In this review, in light of gut injury being a common pathology in aquaculture...
Regional Heatwave Characteristics and Future Projections in China Using NEX ‐ GDDP ‐ CMIP6 Downscaled DataNARA Subscribed
Climate change has increased heatwave frequency, duration, and intensity globally, which is expected to worsen under warmer conditions. Understanding heatwave variabilities is crucial for the ecosystem and human health they impact, yet comprehensive assessments over China at different spatiotemporal scales remain limited. This study evaluates 12 NASA Earth Exchange Global Daily Downscaled Projections' CMIP6 (NEX‐GDDP‐CMIP6) do...
The phylum Acanthocephala is a ubiquitous group of zooparasites, with major socio‐economic importance. The true diversity of the Acanthocephala is obscured by the phenomena of cryptic speciation and a large degree of intraspecific variation. In this study we describe an example of extreme phenotypic variation in neck morphology. The pomphorhynchid acanthocephalans, Longicollum pagrosomi and Pomphorhynchus zhoushanensis were or...
Quaternary Glaciation Accelerates Speciation in Aquatic Snakes Through Recent BottlenecksNARA Subscribed
Climatic fluctuations during glacial periods have profoundly shaped the demographic history and gene flow dynamics of many taxa. This study integrated high‐throughput sequencing of 67 individuals with comprehensive genomic analyses to investigate biogeographic patterns, genetic divergence and demographic trajectories in the Opisthotropis latouchii species complex, a group of mountain stream snakes distributed across Central Ch...
Effect of primate protection on threatened and endemic vertebrates, plants, ecosystem services, and future climate refugiaNARA Subscribed
Primates, 69% of which are threatened with extinction, are the third most specious order of mammals. We used primates as model taxa to examine the umbrella effects of primates on ecosystem services and the protection of other vertebrates and seed plants in Yunnan Province, China. We identified areas of conservation priority for 16 primate species and determined which other threatened and endemic terrestrial vertebrates and see...
Suaeda salsa L. is a typical halophyte with high value as a vegetable. Here, we report a 447.98 Mb, chromosomal‐level genome of S. salsa , assembled into nine pseudomolecules (contig N50 = 1.36 Mb) and annotated with 27,927 annotated protein‐coding genes. Most of the assembled S. salsa genome, 58.03%, consists of transposable elements. Some gene families including HKT1 , NHX , SOS and CASP related to salt resistance were signi...
Aim Biodiversity patterns along elevational gradients have been well documented for vascular plants and terrestrial vertebrates, but we know relatively little about the elevational patterns of bryophytes and their underlying mechanisms, especially the effect of forest microclimate on epiphytic and non‐epiphytic bryophytes. Here we study the influence of microclimates on the richness of epiphytic and non‐epiphytic bryophytes as...
Gloeocystidiellum sinense sp. nov. (Stereaceae, Russulales), a wood‐inhabiting fungus from Yunnan Province, ChinaNARA Subscribed
A new corticioid fungal species Gloeocystidiellum sinense from Yunnan Province, is described and illustrated based on morphological and molecular evidence. This species is characterised by its cream to pink‐buff hymenial surface, a monomitic hyphal system, and ellipsoid basidiospores measuring as 3.7–4.4 × 2.8–3.2 µm. The phylogenetic analyses inferred from ITS + nLSU dataset indicated that the new species G. sinense nested wi...
Microbes in the sea surface microlayer (SML) are key to connecting the ocean and the atmosphere, affecting the exchange of matter, momentum, and heat at the interface. However, their sources have never been quantified systematically. Seawater has long been deemed their major source, whereas atmospheric deposition is regarded as trivial or merely providing additional nutrients. Here, combining atmospheric observations and quant...
Aim Understanding the spatial distribution of genetic variation within species is a central tenet in evolutionary biology and conservation biology. This study explores how historical demographic processes and/or environmental factors interact to affect contemporary genetic variation and adaptive potential, with a specific focus on testing the ‘centre‐periphery’ hypothesis (CPH). Location Subtropical China. Taxon Liquidambar. M...
Green Manure Coupled With Straw Returning Increases Soil Organic Carbon via Decreased Priming Effect and Enhanced Microbial Carbon PumpNARA Subscribed
Green manuring and crop straw returning are widely used to increase soil organic carbon (SOC) sequestration, while the pathways and drivers in native SOC mineralization and new SOC formation after implementing these practices remain unclear. Here, through a 10‐locations' network field experiment in southern China, the effects of green manuring (Mv), rice straw returning (Rs), and their combination (MR) on soil C sequestration...
The study investigated the potential alleviating effect of sodium butyrate (SB) on intestinal injuries caused by glycinin in the diet of common carp. Fish were divided into six groups: a control group (without glycinin and SB), a Gly group (with glycinin), and four groups supplemented with different doses of SB (0.75, 1.50, 2.25, and 3.00 g/kg) based on the Gly group. All diets were isonitrogenous and isoenergetic, and the fis...
Monsoon Climate and Anthropogenic Influences Shape Primate Distributions Across the Southeastern Edge of the Qinghai‐Tibet PlateauNARA Subscribed
The southeastern edge of the Qinghai‐Tibet Plateau (Yunnan, China) exhibits high biodiversity but stark differences in species richness between its western Longitudinal Range Gorge (LRG) and eastern Yunnan Plateau (YP). We collected distribution data for 16 primate species in Yunnan and analyzed palynological records over the past 20 ka from 21 localities to identify the biogeographic, climatic, and anthropogenic factors that...
Proteomic Analysis of Marine Bacteriophages: Structural Conservation, Post‐Translational Modifications, and Phage–Host InteractionsNARA Subscribed
Marine bacteriophages, the most abundant biological entities in marine ecosystems, are essential in biogeochemical cycling. Despite extensive genomic data, many phage genes remain uncharacterised, creating a gap between genomic diversity and gene function knowledge. This gap limits our understanding of phage life cycles, assembly, and host interactions. In this study, we used mass spectrometry to profile the proteomes of 13 ma...
Forest Microclimate as a Driver of Epiphytic Bryophyte Diversity Along a Subtropical Elevational GradientNARA Subscribed
Aim Considering the importance of microclimate in maintaining the diversity of epiphytic bryophytes, we investigated epiphytic bryophytes along an elevational gradient in the subtropical forest of eastern China to unravel the diversity patterns of epiphytic liverworts and mosses along the elevational gradients and the roles of forest microclimates, topographic variables and host plant composition attributes in shaping these el...
Aim Plant invasions are a global problem that requires studying plants and their environmental associations across native and introduced ranges. Location 2000 km transects in China, Europe and North America. Time Period June 2019–July 2020. Major Taxa Studied Japanese knotweed ( Reynoutria japonica ). Methods We surveyed 150 populations of Japanese knotweed, a noxious invader of the temperate zone, along 2000 km transects in n...
Leaf Photosynthetic and Respiratory Thermal Acclimation in Terrestrial Plants in Response to Warming: A Global SynthesisNARA Subscribed
Leaf photosynthesis and respiration are two of the largest carbon fluxes between the atmosphere and biosphere. Although experiments examining the warming effects on photosynthetic and respiratory thermal acclimation have been widely conducted, the sensitivity of various ecosystem and vegetation types to warming remains uncertain. Here we conducted a meta‐analysis on experimental observations of thermal acclimation worldwide. W...
Biogeography of a Global Plant Invader: From the Evolutionary History to Future DistributionsNARA Subscribed
Biological invasions pose a global challenge, affecting ecosystems worldwide and human societies. Knowledge of the evolutionary history of invasive species is critical to understanding their current invasion success and projecting their future spread. However, to date, few studies have addressed the evolutionary history and potential future spread of invaders simultaneously. In this study, we explored both evolutionary history...
Geographic variation in leaf traits and palatability of a native plant invader during domestic expansionNARA Subscribed
Like alien plant invasion, range expansion of native plants may threaten biodiversity and economies, rendering them native invaders. Variation in abiotic and biotic conditions across a large geographic scale greatly affects variation in traits and interactions with herbivores of native plant invaders, which is an interesting yet mostly unexplored issue. We used a common garden experiment to compare defensive/nutritional traits...