Christopher M. Long results 41
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Huron Chipper a Broadly Adapted Chip-Processing Variety with Long-Term Storage Potential and Resistance to Late Blight and Common ScabNARA Subscribed
Huron Chipper is a high yielding round white chip-processing variety with resistance to late blight ( Phytophthora infestans ) and tolerance to common scab ( Streptomyces scabies ). Selected from a cross between the Michigan State University breeding lines MSQ070-1 and MSR156-7, it was designated MSW485-2 during its initial evaluation and development. Huron Chipper is high yielding and broadly adapted, showing equal or better...
Interpretable deep learning reveals spatiotemporal MRI features of brain aging that align with neurodegenerationNARA Subscribed
Cortical thinning and atrophy are hallmarks of brain aging that have been characterized using magnetic resonance imaging (MRI). Brain aging involves many neuroanatomic features whose effects on brain structure remain unexplored. To address this challenge, we trained interpretable deep neural networks (DNNs) to estimate brain age (BA) from T 1 -weighted ( T 1 w) MRI. By identifying MRI features unapparent to humans, DNNs can fi...
Alzheimer’s disease (AD) disproportionately affects women and carriers of the apolipoprotein E ε4 allele (APOE4), yet little is known about how sex and APOE interact to influence white matter (WM) integrity during disease progression. We integrated diffusion MRI and matched blood transcriptomic data to investigate these interactions and their underlying biological mechanisms. WM microstructure was quantified using diffusion te...
The Toxicology Investigators Consortium 2024 Annual ReportNARA Subscribed
Blackberry, an Attractive Deep Purple Potato Variety with Resistance to Common Scab and Extreme Resistance to Potato Virus YNARA Subscribed
Blackberry is a tablestock variety with uniquely deep purple skin and flesh. The tubers have an attractive, uniform, round shape with common scab resistance and low incidence of internal defects. It also carries the Rysto marker for extreme resistance to potato virus Y. When baked or microwaved, the tuber flesh is a brilliant deep purple with an enjoyable mild taste. It was selected in 2011 from a cross between two breeding li...
Manistee, a new Round-White Early to Mid-Season Maturing Potato Variety with Excellent Long-Term Storage PotentialNARA Subscribed
Manistee is a round white chip-processing potato ( Solanum tuberosum ) variety developed for long-term storage. Evaluated as MSL292-A, Manistee is a selection from a cross between Snowden and the chip-processing breeding line MSH098-2. The tubers of Manistee are compressed, round with shallow eyes and early to mid-season maturity. Field testing and on-farm trials show that this variety has high yield potential with specific gr...
Petoskey A High Gravity Chip-Processing Variety with Long-term Storage Potential and Resistance to Common ScabNARA Subscribed
Petoskey is a high specific gravity round white chip-processing potato variety with resistance to common scab ( Streptomyces scabies ). It was selected from a cross between Beacon Chipper and the breeding line MSG227-2, and designated MSV030-4 during the trialling phase of its development. This variety has high yield potential with attractive round, uniform tubers with netted skin. Five years of field testing in Michigan demon...
Mackinaw is a disease resistant round white chip-processing potato with resistance to potato virus Y (PVY), late blight ( Phytophthora infestans ), and tolerance to common scab ( Streptomyces scabies ). Mackinaw also carries the TG689 marker for the H1 resistance gene to golden cyst nematode ( Globodera rostochiensis ) race Ro1. Designated as MSX540-4 during the trialling phase of its development, it was selected from a cross...
Motivation Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R packag...
Predicting the progression of MCI and Alzheimer’s disease on structural brain integrity and other features with machine learningNARA Subscribed
Machine learning (ML) on structural MRI data shows high potential for classifying Alzheimer’s disease (AD) progression, but the specific contribution of brain regions, demographics, and proteinopathy remains unclear. Using Alzheimer’s Disease Neuroimaging Initiative (ADNI) data, we applied an extreme gradient-boosting algorithm and SHAP (SHapley Additive exPlanations) values to classify cognitively normal (CN) older adults, th...
SNAPSHOT USA 2019–2023: The First Five Years of Data From a Coordinated Camera Trap Survey of the United StatesNARA Subscribed
Motivation SNAPSHOT USA is an annual, multicontributor camera trap survey of mammals across the United States. The growing SNAPSHOT USA dataset is intended for tracking the spatial and temporal responses of mammal populations to changes in land use, land cover and climate. These data will be useful for exploring the drivers of spatial and temporal changes in relative abundance and distribution, as well as the impacts of specie...
Previous research has shown that the general population are more likely to learn about certain species groups (such as sharks) from popular media as opposed to their own first-hand experience. Yet, personal encounters with these animals can drastically affect people’s beliefs and behaviors. This study surveyed 380 members of the public to assess their previous experience of encountering sharks and stingrays in the wild as well...
The Toxicology Investigators Consortium 2023 Annual ReportNARA Subscribed
Linear barriers pose significant challenges for wildlife gene flow, impacting species persistence, adaptation, and evolution. While numerous studies have examined the effects of linear barriers (e.g., fences and roadways) on partitioning urban and non‐urban areas, understanding their influence on gene flow within cities remains limited. Here, we investigated the impact of linear barriers on coyote ( Canis latrans ) population...
SNAPSHOT USA 2021: A third coordinated national camera trap survey of the U nited S tatesNARA Subscribed
SNAPSHOT USA is a multicontributor, long‐term camera trap survey designed to survey mammals across the United States. Participants are recruited through community networks and directly through a website application ( https://www.snapshot-usa.org/ ). The growing Snapshot dataset is useful, for example, for tracking wildlife population responses to land use, land cover, and climate changes across spatial and temporal scales. Her...
Introduction Monitoring bycatch of protected species is a fisheries management priority. In practice, protected species bycatch is difficult to precisely or accurately estimate with commonly used ratio estimators or parametric, linear model-based methods. Machine-learning algorithms have been proposed as means of overcoming some of the analytical hurdles in estimating protected species bycatch. Methods Using 17 years of set-sp...
In recent years, Pacific oyster growers in British Columbia (BC), Canada have experienced devastating losses due to summer mortality syndrome. While anecdotal evidence suggests that intertidally-grown oysters may fare better during mass mortality events than deep-water counterparts, there remains a lack of research examining how different culture conditions may influence severity. To address this, we compared growth, condition...
Western Pacific leatherback sea turtles ( Dermochelys coriacea ) are a priority bycatch mitigation concern due to the projected extinction of the population before the end of the 21st century. The species regularly occurs as bycatch in gillnet and surface longline fisheries. Here, we explore the potential for dynamic ocean management in an emerging hotspot of leatherback sea turtle bycatch in the New Zealand pelagic longline f...
We created a database of lost and rediscovered tetrapod species, identified patterns in their distribution and factors influencing rediscovery. Tetrapod species are being lost at a faster rate than they are being rediscovered, due to slowing rates of rediscovery for amphibians, birds and mammals, and rapid rates of loss for reptiles. Finding lost species and preventing future losses should therefore be a conservation priority....
Keystone species populations, including shark and ray taxonomic groups, are declining due to numerous threats. A better understanding of how individual belief structures inform pro-conservation behavioral intentions is therefore critical to foster support for their conservation and the greater biodiversity of world ecosystems. This study conducted a survey to establish the general public’s cognitive beliefs about the mental an...
A replication of the personal-ambient PM2.5 meta-correlationNARA Subscribed
SNAPSHOT USA 2020: A second coordinated national camera trap survey of the United States during the COVID ‐19 pandemicNARA Subscribed
Managing wildlife populations in the face of global change requires regular data on the abundance and distribution of wild animals, but acquiring these over appropriate spatial scales in a sustainable way has proven challenging. Here we present the data from Snapshot USA 2020, a second annual national mammal survey of the USA. This project involved 152 scientists setting camera traps in a standardized protocol at 1485 location...
With aging, skeletal muscle plasticity is attenuated in response to exercise. Here, we report that senescent cells, identified using senescence-associated β-galactosidase (SA β-Gal) activity and p21 immunohistochemistry, are very infrequent in resting muscle, but emerge approximately 2 weeks after a bout of resistance exercise in humans. We hypothesized that these cells contribute to blunted hypertrophic potential in old age....